GENOME SPECIES GSE TREATMENT CONTROL BIGWIG SRR_TREATMENT SRR_CONTROL LIBRARYLAYOUT ASSAYTYPE TRACKNAME XB_ART_ID PUBMED_ID BIN_ID CTRL_BIN_ID GSE_TITLE STATUS_LIST STATUS_IDS SP50 Strongylocentrotus-purpuratus GSE131370 GSM3772832 GSM3772833 GSM3772832_1837.bw ChIP-Seq-Transcription Factor WE (alx1 Ab2) XB-ART-47332 31331943 1837 1836 Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE131370 GSM3772833 GSM3772833_1836.bw ChIP-Seq WE (normal rabbit IgG) XB-ART-47332 31331943 1836 Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE198320 GSM5945021,GSM5945022,GSM5945023 GSM5945021_1849.bw RNA-Seq WE (RNA-Seq) XB-ART-51284 0 1849 An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE198320 GSM5945024,GSM5945025,GSM5945026 GSM5945021,GSM5945022,GSM5945023 GSM5945024_1850.bw RNA-Seq WE (RNA-Seq) (tbxt MO) XB-ART-51284 0 1850 1849 An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE198320 GSM5945027,GSM5945028 GSM5945029,GSM5945030 GSM5945027_1851.bw ChIP-Seq-Transcription Factor WE (ChIP-Seq (tbxt Ab1)) XB-ART-51284 0 1851 1852 An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE198320 GSM5945029,GSM5945030 GSM5945029_1852.bw ChIP-Seq WE (ChIP-Seq (input)) XB-ART-51284 0 1852 An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Curation Complete|PL Ready|Loader Wait 10|12|16 LV30 Lytechinus-variegatus GSE207100 GSM6278508,GSM6278514,GSM6278520 GSM6278508_1844.bw RNA-Seq WE (15 hpf) XB-ART-51285 0 1844 Ethanol-treated Lytechinus variegatus (sea urchin) embryos Curation Complete|PL Ready|Loader Wait 10|12|16 LV30 Lytechinus-variegatus GSE207100 GSM6278509,GSM6278515,GSM6278521 GSM6278508,GSM6278514,GSM6278520 GSM6278509_1846.bw RNA-Seq WE (15 hpf) (EtOH) XB-ART-51285 0 1846 1844 Ethanol-treated Lytechinus variegatus (sea urchin) embryos Curation Complete|PL Ready|Loader Wait 10|12|16 LV30 Lytechinus-variegatus GSE207100 GSM6278510,GSM6278516,GSM6278522 GSM6278510_1845.bw RNA-Seq WE (18 hpf) XB-ART-51285 0 1845 Ethanol-treated Lytechinus variegatus (sea urchin) embryos Curation Complete|PL Ready|Loader Wait 10|12|16 LV30 Lytechinus-variegatus GSE207100 GSM6278511,GSM6278517,GSM6278523 GSM6278510,GSM6278516,GSM6278522 GSM6278511_1847.bw RNA-Seq WE (18 hpf) (EtOH) XB-ART-51285 0 1847 1845 Ethanol-treated Lytechinus variegatus (sea urchin) embryos Curation Complete|PL Ready|Loader Wait 10|12|16 LV30 Lytechinus-variegatus GSE207100 GSM6278512,GSM6278518,GSM6278524 GSM6278512_1857.bw RNA-Seq WE (21 hpf) XB-ART-51285 0 1857 Ethanol-treated Lytechinus variegatus (sea urchin) embryos Curation Complete|PL Ready|Loader Wait 10|12|16 LV30 Lytechinus-variegatus GSE207100 GSM6278513,GSM6278519,GSM6278525 GSM6278512,GSM6278518,GSM6278524 GSM6278513_1858.bw RNA-Seq WE (21 hpf) (EtOH) XB-ART-51285 0 1858 1857 Ethanol-treated Lytechinus variegatus (sea urchin) embryos Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE35876 GSM877247 GSM877247_1842.bw SRR409091 SINGLE RNA-Seq ovary XB-ART-42264 22155525 1842 Select microRNAs are essential for early development in the sea urchin. Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE35876 GSM877248 GSM877248_1840.bw SRR409092 SINGLE RNA-Seq oocyte XB-ART-42264 22155525 1840 Select microRNAs are essential for early development in the sea urchin. Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE35876 GSM877249 GSM877249_1838.bw SRR409093 SINGLE RNA-Seq WE 32-cell stage XB-ART-42264 22155525 1838 Select microRNAs are essential for early development in the sea urchin. Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE35876 GSM877250 GSM877250_1839.bw SRR409094 SINGLE RNA-Seq blastula WE XB-ART-42264 22155525 1839 Select microRNAs are essential for early development in the sea urchin. Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE35876 GSM877251 GSM877251_1841.bw SRR409095 SINGLE RNA-Seq gastrula WE XB-ART-42264 22155525 1841 Select microRNAs are essential for early development in the sea urchin. Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE35876 GSM877252 GSM877252_1843.bw SRR409096 SINGLE RNA-Seq pluteus WE XB-ART-42264 22155525 1843 Select microRNAs are essential for early development in the sea urchin. Curation Complete|PL Ready|Loader Wait 10|12|16 SP50 Strongylocentrotus-purpuratus GSE38606 GSM946005,GSM946006,GSM946007,GSM946008 GSM946009,GSM946010,GSM946011 GSM946005_1830.bw SRR505583,SRR505584,SRR505585,SRR505586 SRR505587,SRR505588,SRR505589 SINGLE RNA-Seq WE (18 C) XB-ART-42522 22856327 1830 1829 Genetics of gene expression responses to temperature stress in a sea urchin gene network (HTS) Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE38606 GSM946009,GSM946010,GSM946011 GSM946009_1829.bw SRR505587,SRR505588,SRR505589 SINGLE RNA-Seq WE (12 C) XB-ART-42522 22856327 1829 Genetics of gene expression responses to temperature stress in a sea urchin gene network (HTS) Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE38644 GSM730036,GSM730037,GSM730038,GSM730039,GSM730040,GSM730041,GSM730042,GSM730043,GSM730044,GSM730045,GSM730046,GSM730047,GSM730048,GSM730049,GSM730050,GSM730051,GSM730052,GSM730053,GSM730054,GSM730055, GSM730036_1831.bw microarray WE (12 C) XB-ART-42522 22856327 1831 Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL) Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE38644 GSM730068,GSM730069,GSM730070,GSM730071,GSM730072,GSM730073,GSM730074,GSM730075,GSM730076,GSM730077,GSM730078,GSM730079,GSM730080,GSM730081,GSM730082,GSM730083,GSM730084,GSM730085,GSM730086,GSM730087, GSM730036,GSM730037,GSM730038,GSM730039,GSM730040,GSM730041,GSM730042,GSM730043,GSM730044,GSM730045,GSM730046,GSM730047,GSM730048,GSM730049,GSM730050,GSM730051,GSM730052,GSM730053,GSM730054,GSM730055, GSM730068_1833.bw microarray WE (18 C) XB-ART-42522 22856327 1833 1831 Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL) Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE38644 GSM730098,GSM730099,GSM730100,GSM730101,GSM730102,GSM730103,GSM730104,GSM730105,GSM730106,GSM730107,GSM730108,GSM730109,GSM730110,GSM730111,GSM730112,GSM730113,GSM730114,GSM730115,GSM730116,GSM730117, GSM730036,GSM730037,GSM730038,GSM730039,GSM730040,GSM730041,GSM730042,GSM730043,GSM730044,GSM730045,GSM730046,GSM730047,GSM730048,GSM730049,GSM730050,GSM730051,GSM730052,GSM730053,GSM730054,GSM730055, GSM730098_1832.bw microarray WE (15 C) XB-ART-42522 22856327 1832 1831 Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL) Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE76067 GSM1973611 GSM1973611_1834.bw SRR3017856 PAIRED RNA-Seq WE (glycerol) XB-ART-44383 26657764 1834 Gene expression alterations in SoxC knockdown sea urchin embryos Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE76067 GSM1973612 GSM1973611 GSM1973612_1835.bw SRR3017857 SRR3017856 PAIRED RNA-Seq WE (sox4 MO) XB-ART-44383 26657764 1835 1834 Gene expression alterations in SoxC knockdown sea urchin embryos Curation Complete|PL Wait|Loader Wait 10|11|16 SP50 Strongylocentrotus-purpuratus GSE89862 GSM2391746 GSM2391747 GSM2391746_1859.bw ChIP-Seq-Transcription Factor T-box brain transcription factor 1 WE - mid-gastrula stage XB-ART-45554 28584099 1859 1860 Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata) Partial Manual Curation|PL Ready|Loader Wait 9|12|16 SP50 Strongylocentrotus-purpuratus GSE89862 GSM2391747 GSM2391747_1860.bw ChIP-Seq-Transcription Factor input WE - mid-gastrula stage XB-ART-45554 28584099 1860 Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata) Partial Manual Curation|PL Ready|Loader Wait 9|12|16 SP50 Strongylocentrotus-purpuratus GSE96927 GSM2546185,GSM2546186,GSM2546187 GSM2546188,GSM2546189,GSM2546190 GSM2546185_1856.bw DNase-Seq WE (U0126) XB-ART-46197 29558892 1856 1853 Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage Partial Manual Curation|PL Wait|Loader Wait 9|11|16 SP50 Strongylocentrotus-purpuratus GSE96927 GSM2546188,GSM2546189,GSM2546190 GSM2546188_1853.bw DNase-Seq WE (Control) XB-ART-46197 29558892 1853 Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage Partial Manual Curation|PL Wait|Loader Wait 9|11|16 SP50 Strongylocentrotus-purpuratus GSE96927 GSM2546191,GSM2546192 GSM2546193,GSM2546194 GSM2546191_1855.bw ATAC-Seq PMCs XB-ART-46197 29558892 1855 1854 Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage Partial Manual Curation|PL Wait|Loader Wait 9|11|16 SP50 Strongylocentrotus-purpuratus GSE96927 GSM2546193,GSM2546194 GSM2546193_1854.bw ATAC-Seq Non-PMCs XB-ART-46197 29558892 1854 Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage Partial Manual Curation|PL Wait|Loader Wait 9|11|16