35876 Jonas Maaskola Select microRNAs are essential for early development in the sea urchin. microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel Small RNA expression profiling in early sea urchin development 22155525 42264 SRP010973 WE 32-cell stage RNA-Seq 32-cell stage Song JL et al. (2012) GSM877249 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt 35876 Jonas Maaskola Select microRNAs are essential for early development in the sea urchin. microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel Small RNA expression profiling in early sea urchin development 22155525 42264 SRP010973 blastula WE RNA-Seq Song JL et al. (2012) GSM877250 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt 35876 Jonas Maaskola Select microRNAs are essential for early development in the sea urchin. microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel Small RNA expression profiling in early sea urchin development 22155525 42264 SRP010973 oocyte RNA-Seq Song JL et al. (2012) GSM877248 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt 35876 Jonas Maaskola Select microRNAs are essential for early development in the sea urchin. microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel Small RNA expression profiling in early sea urchin development 22155525 42264 SRP010973 gastrula WE RNA-Seq Song JL et al. (2012) GSM877251 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt 35876 Jonas Maaskola Select microRNAs are essential for early development in the sea urchin. microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel Small RNA expression profiling in early sea urchin development 22155525 42264 SRP010973 ovary RNA-Seq Song JL et al. (2012) GSM877247 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt 35876 Jonas Maaskola Select microRNAs are essential for early development in the sea urchin. microRNAs (miRNAs) are small noncoding RNAs that mediate post-transcriptional gene regulation and have emerged as essential regulators of many develop Jonas Maaskola, Jia Song, Marlon Stoeckius, Marc Friedländer, Nadezda  Stepicheva, Celina  Juliano, Svetlana  Lebedeva, William  Thompson, Nikolaus  Rajewsky, Gary Wessel Small RNA expression profiling in early sea urchin development 22155525 42264 SRP010973 pluteus WE RNA-Seq Song JL et al. (2012) GSM877252 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE35876/STRPU_5.0/RNA-Seq/Readme.txt 38606 Daniel Runcie Genetics of gene expression responses to temperature stress in a sea urchin gene network (HTS) Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray 7 RNAseq samples representing embryos grown at 2 temperatures, from 3 female parents and 2 male parents 22856327 42522 SRP013629 WE (12 C) RNA-Seq Runcie DE et al. (2012) GSM946009,GSM946010,GSM946011 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Readme.txt 38606 Daniel Runcie Genetics of gene expression responses to temperature stress in a sea urchin gene network (HTS) Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray 7 RNAseq samples representing embryos grown at 2 temperatures, from 3 female parents and 2 male parents 22856327 42522 SRP013629 WE (18 C) RNA-Seq Runcie DE et al. (2012) GSM946005,GSM946006,GSM946007,GSM946008 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38606/STRPU_5.0/RNA-Seq/Readme.txt 38644 Daniel Runcie Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL) Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray 191 samples representing 32 cultures from 8 male and 8 female parents, grown in replicate at 3 temperatures 22856327 42522 WE (12 C) microarray Runcie DE et al. (2012) GSM730036,GSM730037,GSM730038,GSM730039,GSM730040,GSM730041,GSM730042,GSM730043,GSM730044,GSM730045,GSM730046,GSM730047,GSM730048,GSM730049,GSM730050,GSM730051,GSM730052,GSM730053,GSM730054,GSM730055, None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Readme.txt 38644 Daniel Runcie Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL) Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray 191 samples representing 32 cultures from 8 male and 8 female parents, grown in replicate at 3 temperatures 22856327 42522 WE (15 C) microarray Runcie DE et al. (2012) GSM730098,GSM730099,GSM730100,GSM730101,GSM730102,GSM730103,GSM730104,GSM730105,GSM730106,GSM730107,GSM730108,GSM730109,GSM730110,GSM730111,GSM730112,GSM730113,GSM730114,GSM730115,GSM730116,GSM730117, None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Readme.txt 38644 Daniel Runcie Genetics of gene expression responses to temperature stress in a sea urchin gene network (DASL) Stress responses play an important role in shaping species distributions and robustness to climate change. We investigated how stress responses alter Daniel Runcie, Daniel Runcie, David Garfield, Courtney Babbitt, Jennifer Wygoda, Sayan Mukherjee, Gregory Wray 191 samples representing 32 cultures from 8 male and 8 female parents, grown in replicate at 3 temperatures 22856327 42522 WE (18 C) microarray Runcie DE et al. (2012) GSM730068,GSM730069,GSM730070,GSM730071,GSM730072,GSM730073,GSM730074,GSM730075,GSM730076,GSM730077,GSM730078,GSM730079,GSM730080,GSM730081,GSM730082,GSM730083,GSM730084,GSM730085,GSM730086,GSM730087, None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE38644/STRPU_5.0/microarray/Readme.txt 76067 Robert Angerer Gene expression alterations in SoxC knockdown sea urchin embryos Transcription factor SoxC is required for all neural development in purple sea urchin S. purpuratus embryos. To begin to develop a gene regulatory net Robert Angerer, Zheng Wei, Lynne Angerer, Robert Angerer SoxC function was knocked down by morpholino oligo injection. RNA from about 1000 embryos were collected for both control and knockdown samples. 26657764 44383 SRP067439 WE (glycerol) RNA-Seq Wei Z et al. (2016) GSM1973611 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Readme.txt 76067 Robert Angerer Gene expression alterations in SoxC knockdown sea urchin embryos Transcription factor SoxC is required for all neural development in purple sea urchin S. purpuratus embryos. To begin to develop a gene regulatory net Robert Angerer, Zheng Wei, Lynne Angerer, Robert Angerer SoxC function was knocked down by morpholino oligo injection. RNA from about 1000 embryos were collected for both control and knockdown samples. 26657764 44383 SRP067439 WE (sox4 MO) RNA-Seq Wei Z et al. (2016) GSM1973612 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE76067/STRPU_5.0/RNA-Seq/Readme.txt 89862 Gregory Cary Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata) Sea stars and sea urchins are model systems for interrogating the types of deep evolutionary changes that have restructured developmental gene regulat Gregory Cary, Gregory Cary, Veronica Hinman Chromatin immunoprecipiation was performed using custom antibodies raised against either the sea urchin or the sea star protein. One biological replicate each, prepared by pooling chromatin from 2-3 independently fertilized cultures prior to immunoprecipitation, was used. Input and immunoprecipitated chromatin was sequenced for each species. 28584099 45554 SRP096048 T-box brain transcription factor 1 WE - mid-gastrula stage ChIP-Seq Cary GA et al. (2017) GSM2391746 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Readme.txt 89862 Gregory Cary Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata) Sea stars and sea urchins are model systems for interrogating the types of deep evolutionary changes that have restructured developmental gene regulat Gregory Cary, Gregory Cary, Veronica Hinman Chromatin immunoprecipiation was performed using custom antibodies raised against either the sea urchin or the sea star protein. One biological replicate each, prepared by pooling chromatin from 2-3 independently fertilized cultures prior to immunoprecipitation, was used. Input and immunoprecipitated chromatin was sequenced for each species. 28584099 45554 SRP096048 T-box brain transcription factor 1 WE - mid-gastrula stage ChIP-Seq Cary GA et al. (2017) GSM2391746 ChIP-Seq/Transcription Factor/tbr Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Readme.txt 89862 Gregory Cary Genome-wide detection of Tbrain binding sites during early development in both sea urchin (S. purpuratus) and sea star (P. miniata) Sea stars and sea urchins are model systems for interrogating the types of deep evolutionary changes that have restructured developmental gene regulat Gregory Cary, Gregory Cary, Veronica Hinman Chromatin immunoprecipiation was performed using custom antibodies raised against either the sea urchin or the sea star protein. One biological replicate each, prepared by pooling chromatin from 2-3 independently fertilized cultures prior to immunoprecipitation, was used. Input and immunoprecipitated chromatin was sequenced for each species. 28584099 45554 SRP096048 input WE - mid-gastrula stage ChIP-Seq Cary GA et al. (2017) GSM2391747 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE89862/STRPU_5.0/ChIP-Seq/Readme.txt 96927 Charles Ettensohn Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs, Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample. 29558892 46197 SRP102309 WE (Control) DNase-Seq Shashikant T et al. (2018) GSM2546188,GSM2546189,GSM2546190 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Readme.txt 96927 Charles Ettensohn Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs, Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample. 29558892 46197 SRP102309 Non-PMCs ATAC-Seq Shashikant T et al. (2018) GSM2546193,GSM2546194 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Readme.txt 96927 Charles Ettensohn Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs, Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample. 29558892 46197 SRP102309 PMCs ATAC-Seq Shashikant T et al. (2018) GSM2546191,GSM2546192 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/ATAC-Seq/Readme.txt 96927 Charles Ettensohn Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs, Charles Ettensohn, Tanvi Shashikant, Jian-Ming Khor DNase-seq performed on U0126-treated PMC(-) S. purpuratus embryos at 28 hpf and control whole embryos at 28 hpf. There are 2 samples and 3 replicates for each sample. ATAC-seq was performed on isolated PMCs at 24 hpf and other non-PMC cells of the embryo at 24 hpf. There were 2 samples and 2 replicates per sample. 29558892 46197 SRP102309 WE (U0126) DNase-Seq Shashikant T et al. (2018) GSM2546185,GSM2546186,GSM2546187 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Partial Manual Curation|PL Wait|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE96927/STRPU_5.0/DNase-Seq/Readme.txt 131370 Jian Ming Khor Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis ChIP-seq provides a genome-wide view of the binding sites of Alx1, a pivotal transcription factor in a gene regulatory network that controls skeletoge Jian Ming Khor, Charles Ettensohn Three independent cultures of S. purpuratus were collected and processed at the mesenchyme blastula stage (24 hpf). For each culture, ChIP was performed using α-Sp-Alx1 and normal rabbit IgG (Sigma-Aldrich, Cat. No. 12370) was used for mock IP. 31331943 47332 SRP198689 WE (normal rabbit IgG) ChIP-Seq Khor JM et al. (2019) GSM3772833 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Readme.txt 131370 Jian Ming Khor Genome-wide identification of binding sites and gene targets of Alx1, a pivotal regulator of echinoderm skeletogenesis ChIP-seq provides a genome-wide view of the binding sites of Alx1, a pivotal transcription factor in a gene regulatory network that controls skeletoge Jian Ming Khor, Charles Ettensohn Three independent cultures of S. purpuratus were collected and processed at the mesenchyme blastula stage (24 hpf). For each culture, ChIP was performed using α-Sp-Alx1 and normal rabbit IgG (Sigma-Aldrich, Cat. No. 12370) was used for mock IP. 31331943 47332 SRP198689 WE (alx1 Ab2) ChIP-Seq Khor JM et al. (2019) GSM3772832 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE131370/STRPU_5.0/ChIP-Seq/Readme.txt 198320 Maria Ina Arnone An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq. 0 51284 WE (RNA-Seq) RNA-Seq GSM5945021,GSM5945022,GSM5945023 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Readme.txt 198320 Maria Ina Arnone An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq. 0 51284 WE (RNA-Seq) (tbxt MO) RNA-Seq GSM5945024,GSM5945025,GSM5945026 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/RNA-Seq/Readme.txt 198320 Maria Ina Arnone An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq. 0 51284 WE (ChIP-Seq (tbxt Ab1)) ChIP-Seq GSM5945027,GSM5945028 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Readme.txt 198320 Maria Ina Arnone An ancestral Wnt-Brachyury feedback loop and vertebrate-specific recruitment of mesoderm-determining target genes revealed by comparative Brachyury target screens Transcription factor brachyury plays a key role during mesoderm development in vertebrates. In this study we study study the effect of this transcript Maria Ina Arnone, Carmen Andrikou, Danila Voronov, Rohit Dnyansagar, Michaela Schwaiger, Periklis Paganos, Ulrich Technau Brachyury binding sites were identified with ChIP-seq and effect of brachyury binding on gene expression was studied with RNA-seq. 0 51284 WE (ChIP-Seq (input)) ChIP-Seq GSM5945029,GSM5945030 None Strongylocentrotus purpuratus SP50 STRPU_5.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE198320/STRPU_5.0/ChIP-Seq/Readme.txt 207100 Cynthia Bradham Ethanol-treated Lytechinus variegatus (sea urchin) embryos The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf. 0 51285 WE (15 hpf) RNA-Seq GSM6278508,GSM6278514,GSM6278520 None Lytechinus variegatus LV30 LYTVA_3.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt 207100 Cynthia Bradham Ethanol-treated Lytechinus variegatus (sea urchin) embryos The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf. 0 51285 WE (18 hpf) RNA-Seq GSM6278510,GSM6278516,GSM6278522 None Lytechinus variegatus LV30 LYTVA_3.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt 207100 Cynthia Bradham Ethanol-treated Lytechinus variegatus (sea urchin) embryos The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf. 0 51285 WE (15 hpf) (EtOH) RNA-Seq GSM6278509,GSM6278515,GSM6278521 None Lytechinus variegatus LV30 LYTVA_3.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt 207100 Cynthia Bradham Ethanol-treated Lytechinus variegatus (sea urchin) embryos The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf. 0 51285 WE (18 hpf) (EtOH) RNA-Seq GSM6278511,GSM6278517,GSM6278523 None Lytechinus variegatus LV30 LYTVA_3.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt 207100 Cynthia Bradham Ethanol-treated Lytechinus variegatus (sea urchin) embryos The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf. 0 51285 WE (21 hpf) RNA-Seq GSM6278512,GSM6278518,GSM6278524 None Lytechinus variegatus LV30 LYTVA_3.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt 207100 Cynthia Bradham Ethanol-treated Lytechinus variegatus (sea urchin) embryos The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Cynthia Bradham, Nahomie Rodriguez-Sastre, Dakota Hawkins, Cynthia Bradham Control and ethanol-treated sea urchin embryos at 15, 18, and 21 hpf. 0 51285 WE (21 hpf) (EtOH) RNA-Seq GSM6278513,GSM6278519,GSM6278525 None Lytechinus variegatus LV30 LYTVA_3.0 Curation Complete|PL Ready|Loader Wait ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100 ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/BigWigs ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/ExpressionFiles ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/DE_Analysis ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Called_Peaks ftp.xenbaseturbofrog.org/Genomics/GEO/GSE207100/LYTVA_3.0/RNA-Seq/Readme.txt